Publications

Avkshtol V, Ruth KJ, Ross EA, Hallman MA, Greenberg RE, Price RA, Jr., Leachman B, Uzzo RG, Ma C, Chen D, Geynisman DM, Sobczak ML, Zhang E, Wong JK, Pollack A, Horwitz EM. Ten-Year Update of a Randomized, Prospective Trial of Conventional Fractionated Versus Moderate Hypofractionated Radiation Therapy for Localized Prostate Cancer. J Clin Oncol. 2020;38(15):1676-84. Epub 2020/03/03. doi: 10.1200/jco.19.01485. PubMed PMID: 32119599; PMCID: PMC7238488.

Collins BN, Lepore SJ, Egleston BL. Multilevel Intervention for Low-Income Maternal Smokers in the Special Supplemental Nutrition Program for Women, Infants, and Children (WIC). Am J Public Health. 2022;112(3):472-81. doi: 10.2105/ajph.2021.306601. PubMed PMID: 35196033; PMCID: PMC8887159.

Correa AF, Ruth KJ, Al-Saleem T, Pei J, Dulaimi E, Kister D, Collins M, Abbosh PH, Slifker MJ, Ross E, Uzzo RG, Testa JR. Overall tumor genomic instability: an important predictor of recurrence-free survival in patients with localized clear cell renal cell carcinoma. Cancer Biol Ther. 2020;21(5):424-31. Epub 2020/03/03. doi: 10.1080/15384047.2020.1721251. PubMed PMID: 32116106; PMCID: PMC7515487.

Egleston BL, Bai T, Bleicher RJ, Taylor SJ, Lutz MH, Vucetic S. Statistical inference for natural language processing algorithms with a demonstration using type 2 diabetes prediction from electronic health record notes. Biometrics. 2021;77(3):1089-100. Epub 2020/07/24. doi: 10.1111/biom.13338. PubMed PMID: 32700317; PMCID: PMC7854976.

Francescone R, Barbosa Vendramini-Costa D, Franco-Barraza J, Wagner J, Muir A, Lau AN, Gabitova L, Pazina T, Gupta S, Luong T, Rollins D, Malik R, Thapa RJ, Restifo D, Zhou Y, Cai KQ, Hensley HH, Tan Y, Kruger WD, Devarajan K, Balachandran S, Klein-Szanto AJ, Wang H, El-Deiry WS, Vander Heiden MG, Peri S, Campbell KS, Astsaturov I, Cukierman E. Netrin G1 promotes pancreatic tumorigenesis through cancer associated fibroblast driven nutritional support and immunosuppression. Cancer Discov. 2021;11(2):446-79. Epub 2020/11/01. doi: 10.1158/2159-8290.Cd-20-0775. PubMed PMID: 33127842; PMCID: PMC7858242.

Gabitova-Cornell L, Surumbayeva A, Peri S, Franco-Barraza J, Restifo D, Weitz N, Ogier C, Goldman AR, Hartman TR, Francescone R, Tan Y, Nicolas E, Shah N, Handorf EA, Cai KQ, O'Reilly AM, Sloma I, Chiaverelli R, Moffitt RA, Khazak V, Fang CY, Golemis EA, Cukierman E, Astsaturov I. Cholesterol Pathway Inhibition Induces TGF-β Signaling to Promote Basal Differentiation in Pancreatic Cancer. Cancer Cell. 2020;38(4):567-83 e11. Epub 2020/09/26. doi: 10.1016/j.ccell.2020.08.015. PubMed PMID: 32976774; PMCID: PMC7572882.

Handorf E, Yin Y, Slifker M, Lynch S. Variable selection in social-environmental data: sparse regression and tree ensemble machine learning approaches. BMC Med Res Methodol. 2020;20(1):302. Epub 2020/12/12. doi: 10.1186/s12874-020-01183-9. PubMed PMID: 33302880; PMCID: PMC7727197.

Liu JC, Egleston B, Blackman E, Ragin C. Racial Survival Disparities in Head and Neck Cancer Clinical Trials. J Natl Cancer Inst. 2022. Epub 20221207. doi: 10.1093/jnci/djac219. PubMed PMID: 36477855; PMCID: NEEDS.

Tricarico R, Madzo J, Scher G, Cohen M, Jelinek J, Maegawa S, Nagarathinam R, Scher C, Chang WC, Nicolas E, Slifker M, Zhou Y, Devarajan K, Cai KQ, Kwok T, Nakajima P, Xu J, Mancuso P, Doneddu V, Bagella L, Williams R, Balachandran S, Maskalenko N, Campbell K, Ma X, Cañadas I, Viana J, Moreno V, Valle L, Grivennikov S, Peshkova I, Kurilenko N, Mazitova A, Koltsova E, Lee H, Walsh M, Duttweiler R, Whetstine JR, Yen TJ, Issa JP, Bellacosa A. TET1 and TDG suppress inflammatory response in intestinal tumorigenesis: implications for colorectal tumors with the CpG Island Methylator Phenotype. Gastroenterology. 2023. Epub 20230208. doi: 10.1053/j.gastro.2023.01.039. PubMed PMID: 36764492.

Wang Y, Bernhardy AJ, Nacson J, Krais JJ, Tan YF, Nicolas E, Radke MR, Handorf E, Llop-Guevara A, Balmana J, Swisher EM, Serra V, Peri S, Johnson N. BRCA1 intronic Alu elements drive gene rearrangements and PARP inhibitor resistance. Nat Commun. 2019;10(1):5661. Epub 2019/12/13. doi: 10.1038/s41467-019-13530-6. PubMed PMID: 31827092; PMCID: PMC6906494.

Zhang T, Yin C, Boyd DF, Quarato G, Ingram JP, Shubina M, Ragan KB, Ishizuka T, Crawford JC, Tummers B, Rodriguez DA, Xue J, Peri S, Kaiser WJ, Lopez CB, Xu Y, Upton JW, Thomas PG, Green DR, Balachandran S. Influenza Virus Z-RNAs Induce ZBP1-Mediated Necroptosis. Cell. 2020;180(6):1115-29.e13. Epub 2020/03/24. doi: 10.1016/j.cell.2020.02.050. PubMed PMID: 32200799; PMCID: PMC7153753.

Zibelman M, Asghar AM, Parker DC, O'Neill J, Wei S, Greenberg RE, Smaldone MC, Chen DYT, Viterbo R, Uzzo RG, Bloom E, Kokate R, Geynisman DM, Ghatalia P, Deng M, Ross EA, Plimack E, Abbosh PH, Kutikov A. Cystoscopy and Systematic Bladder Tissue Sampling in Predicting pT0 Bladder Cancer: A Prospective Trial. J Urol. 2021;205(6):1605-11. Epub 2021/02/05. doi: 10.1097/ju.0000000000001602. PubMed PMID: 33535799; PMCID: PMC9006869